Now in Beta — 42.9% CAGR Market

AI Agents for Bioinformatics

Automated workflows for sequence analysis, protein structure prediction, and NGS pipelines. LangGraph-powered agents that orchestrate EBI, NCBI, and AlphaFold APIs.

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€29/mo Starter • No credit card required • Cancel anytime

LangGraph Agent Execution 
const agent = await client.createAgent({
  name: 'sequence-analyzer',
  workflow: 'dna-analysis',
  config: {
    databases: ['ena', 'ncbi'],
    analysis: ['orf', 'gc_content']
  }
});

// Execute agent with sequence
const result = await agent.run({
  sequence: 'ATGCGTACGTAGCTAGCTAGCTAGCTAGC',
  format: 'fasta'
});

// Returns: automated analysis
console.log(result);
// { orf: [...], gc_content: 52.3%,
//   ena_matches: 12, annotations: [...] }

AI Agents

Pre-built agents for common workflows

Each agent is a LangGraph workflow that orchestrates multiple bioinformatics tools and databases.

Sequence Analysis Agent

DNA/protein sequence analysis with automated EBI/ENA queries. ORF finding, GC content, motif detection.

  • Automated EBI/ENA API queries
  • ORF detection & translation
  • Motif & pattern matching

Structure Prediction Agent

Batch AlphaFold/OpenFold protein structure prediction with automated MSA generation and quality assessment.

  • Batch AlphaFold inference
  • Automated MSA generation
  • pLDDT quality scoring

NGS Pipeline Agent

End-to-end NGS workflow: FASTQ → alignment → variant calling → annotation. BWA, GATK, and SnpEff orchestration.

  • FASTQ QC & trimming
  • BWA-MEM alignment
  • Variant annotation

How It Works

LangGraph-powered agent orchestration

1

Select Agent

Choose from pre-built agents or configure your own workflow

2

Submit Data

Upload sequences, FASTQ files, or protein lists via API

3

Agent Orchestrates

AI agent executes workflow, queries databases, runs tools

4

Get Results

Receive structured JSON with analysis results and annotations

Pricing

Simple, usage-based pricing

Start free, scale as you grow

Starter

For solo researchers

€29 /mo
  • 1,000 API calls/mo
  • 1 agent active
  • Standard support
Join waitlist
Popular

Pro

For biotech startups

€79 /mo
  • 10,000 API calls/mo
  • 3 agents active
  • Webhook notifications
  • Priority support
Join waitlist

Enterprise

For pharma & labs

€199 /mo
  • Unlimited API calls
  • Unlimited agents
  • Custom pipelines
  • SLA & dedicated support
Contact sales

Developer-First API

RESTful endpoints with comprehensive documentation. SDKs for Python and JavaScript.

OpenAPI Spec

Full OpenAPI 3.0 specification with interactive docs

Async Job Processing

Long-running tasks via async jobs with webhook callbacks

API Key Authentication

Simple API key auth with rate limiting and usage tracking

example.py 
from bioagents import BioAgentsClient

# Initialize client
client = BioAgentsClient(api_key="your-api-key")

# Create and run sequence analysis agent
agent = client.agents.create(
    name="my-sequence-agent",
    workflow="sequence-analysis",
    config={
        "databases": ["ena", "ncbi"],
        "analysis": ["orf", "gc_content", "motifs"]
    }
)

# Execute analysis
result = agent.run(
    sequence="ATGCGTACGTAGCTAGCTAGC",
    format="fasta"
)

# Process results
print(result.annotations)
print(result.enrichment_matches)

Join the Beta

Get early access to Bioinformatics AI Agents. Free tier included.

Questions? Contact api@tomd.space